p53_pathways

<p>This is a pathway list obtained from <code>get_reactome_pathways</code>
with <code>species = "human"</code> (used <code>reactome.db</code> version 1.68.0).
Only pathways with "p53" in their name are retained (to subset on some
cancer-related pathways). The list contains 13 total pathways. See the
"Package data" vignette for details.</p>

datasets

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

p53_pathways function

<p>A list of 13 vectors each containing a set of entregene IDs.</p>

p53_pathways: Reactome pathway list for Homo sapiens

Description

Usage

Arguments

Format