makeSkylines
getSkylines(
clones,
dir,
id,
time,
burnin = 10,
bins = 100,
verbose = 0,
forward = TRUE,
nproc = 1,
max_height = c("min", "median", "mean", "max")
)Bayesian Skyline values for given clone
clone tibble
directory of BEAST trees file
unique identifer for this analysis
name of time column
Burnin percent (default 10)
number of bins for plotting
if 1, print name of clones
plot in forward or (FALSE) backward time?
processors for parallelization (by clone)
max height to use (min, median, mean, max)
Burnin set from readBEAST or getTrees