sampleClones

<code>sampleClones</code> Down-sample clones to specified size

Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.

Kenneth Hoehn

dowser

B Cell Receptor Phylogenetics Toolkit

Cole Jensen

Jessie Fielding

Hunter Melton

Susanna Marquez

Jason Vander Heiden

Steven Kleinstein

sampleClones function

<dl><dt>clones</dt>
<dd>a tibble of airrClone objects</dd>
<dt>size</dt>
<dd>target size</dd>
<dt>weight</dt>
<dd>column for weighting sample probability</dd>
<dt>group</dt>
<dd>column (or columns) to sample evenly among groups</dd></dl>

Arguments

sampleClones Down-sample clones to specified size — sampleClones

<dl>

<dt>clones</dt>
<dd>a tibble of airrClone objects</dd>


<dt>size</dt>
<dd>target size</dd>


<dt>weight</dt>
<dd>column for weighting sample probability</dd>


<dt>group</dt>
<dd>column (or columns) to sample evenly among groups</dd>

</dl>

sampleClones: `sampleClones` Down-sample clones to specified size

Description

Usage

Value

Arguments