dowser (version 2.5.1)

dowserObjectEquivalent: dowserObjectEquivalent Experimental. Check if two Dowser objects are equivalent

Description

dowserObjectEquivalent Experimental. Check if two Dowser objects are equivalent

Usage

dowserObjectEquivalent(
  obj1,
  obj2,
  verbose = TRUE,
  edge_tol = 1e-08,
  dowser_fields = TRUE,
  nproc = 1
)

Arguments

obj1

First Dowser object

obj2

Second Dowser object

verbose

print out more info

edge_tol

tolerance for branch length checks (if check=TRUE)

dowser_fields

check dowser-specific fields and gapped sequences?

nproc

number of cores to use

Details

In addition to the existing tree topology, edge length, sequence, and data slot checks, this also verifies tree$parameters when present -- including build="pml" trees.