writeFasta

<code>writeFasta</code> Write a fasta file of sequences given a 
named list of sequences

Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.

Kenneth Hoehn

dowser

B Cell Receptor Phylogenetics Toolkit

Cole Jensen

Jessie Fielding

Hunter Melton

Susanna Marquez

Jason Vander Heiden

Erick Matsen

Steven Kleinstein

writeFasta function

<dl><dt>seqs</dt>
<dd>named list of sequences (output from <code>readFasta</code>)</dd>
<dt>file</dt>
<dd>FASTA file for output</dd></dl>

Arguments

writeFasta Write a fasta file of sequences given a 
named list of sequences — writeFasta

<dl>

<dt>seqs</dt>
<dd>named list of sequences (output from <code>readFasta</code>)</dd>


<dt>file</dt>
<dd>FASTA file for output</dd>

</dl>

writeFasta: `writeFasta` Write a fasta file of sequences given a named list of sequences

Description

Usage

Value

Arguments