dowser (version 2.5.2)

treesEquivalent: Check whether two tree objects are equivalent

Description

Check whether two tree objects are equivalent

Usage

treesEquivalent(
  obja,
  objb,
  edge_tol = 1e-06,
  numbering_match = FALSE,
  clonesa = NULL,
  clonesb = NULL,
  check_extended = FALSE,
  gaps = TRUE
)

Arguments

obja

First phylo or treedata object

objb

Second phylo or treedata object

edge_tol

allowable error in branch length checks (proportional error if lengths > 1, if check=TRUE)

numbering_match

require internal node numbers to match?

clonesa

Dowser clones object associated with obja (if check_extended=TRUE)

clonesb

Dowser clones object associated with objb (if check_extended=TRUE)

check_extended

Also check node sequences and state vector? Requires clonesa/b to be supplied

gaps

check sequences wth IMGT gaps with check_extended?

Details

For treedata objects, check both @phylo and @data