dpcR (version 0.3)

adpcr-class: Class "adpcr" - end-point array digital PCR experiments

Description

A class specifically designed to contain results from end-point array digital PCR experiments. Data is represented as matrix, where each column describes different experiment. Type of data in all columns is specified in slot "type". Inherits from dpcr.

Slots

breaks

"numeric" vector giving the number of intervals into which .Data should be cut. The second element in breaks vector is considered a threshold. Partition above or equal to threshold is counted as positive.

col_names

"character" vector naming the columns in the array.

row_names

"character" vector naming the rows in the array.

panel_id

"factor" naming the panel to which experiment belong.

Details

For more in-depth explanation of digital PCR data structure, see dpcr.

See Also

Data management: adpcr2panel, bind_dpcr, extract_dpcr.

Plotting: plot_panel.

Tests: test_panel.

Simulation: sim_adpcr.

Real-time array digital PCR: rtadpcr.

Droplet digital PCR: ddpcr.

Examples

rand_array <- sim_adpcr(400, 1600, 100, pos_sums = FALSE, n_panels = 5)
one_rand_array <- extract_dpcr(rand_array, 1)
plot_panel(one_rand_array, 40, 40)