gsa_set

Gene set provided by Subramanian et al., (2005). A list with gene set vector, gene set description vector and a list whose elements are vector of genes in each gene set.

Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.

Chao Ye

dslice

Dynamic Slicing

Bo Jiang

gsa_set function

A list with three elements: gene set name, gene set description and genes in gene set.<dl>
 <dt><code>set_name</code></dt>
<dd>a character vector of gene set name.</dd> <dt><code>set_description</code></dt>
<dd>a character vector of gene set description.</dd> <dt><code>set_description</code></dt>
<dd>a list whose elements are vector. Each of them contains genes in each gene set.</dd> 
</dl>

Format

Gene set list in gene set analysis — gsa_set

A list with three elements: gene set name, gene set description and genes in gene set.<dl>
 <dt><code>set_name</code></dt>
<dd>a character vector of gene set name.</dd>

 <dt><code>set_description</code></dt>
<dd>a character vector of gene set description.</dd>

 <dt><code>set_description</code></dt>
<dd>a list whose elements are vector. Each of them contains genes in each gene set.</dd>

 
</dl>

gsa_set: Gene set list in gene set analysis

Description

Usage

Arguments

Format

References

Examples