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dtGAP (version 0.0.2)

make_main_heatmap: Draw Main Heatmap with Annotations

Description

Combines sorted data matrix and provided annotations into a single Heatmap.

Usage

make_main_heatmap(
  sorted_dat,
  split_vec,
  pred_ha,
  row_prop_ha,
  layout,
  palette = "Blues",
  n_colors = 9,
  show_row_names = TRUE,
  row_names_gp = gpar(fontsize = 5),
  show_row_prox = TRUE,
  raw_value_col = NULL
)

Value

A configured Heatmap object.

Arguments

sorted_dat

List from sorted_mat(), containing sorted_test_matrix.

split_vec

Factor defining row splits in the heatmap.

pred_ha

A rowAnnotation for predictions (from prediction_annotation).

row_prop_ha

A rowAnnotation for row proximity (from row_prop_anno).

layout

List with row_h and col_h in mm.

palette

RColorBrewer palette for heatmap values (default "Blues").

n_colors

Number of colors for heatmap (default 9).

show_row_names

Logical. Whether to display row names in the heatmap (default TRUE).

row_names_gp

gpar settings for row name font (default fontsize=5).

show_row_prox

Logical, whether to show the right annotation for row proximity.

raw_value_col

User-defined colors for raw data values.