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dtangle (version 2.0.9)

Cell Type Deconvolution from Gene Expressions

Description

Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) .

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Version

Install

install.packages('dtangle')

Monthly Downloads

245

Version

2.0.9

License

GPL-3

Maintainer

Gregory Hunt

Last Published

December 1st, 2019

Functions in dtangle (2.0.9)

combine_Y_refs

Row-binds Y with references and generates pure_samples.
dtangle2

Deconvolve cell type mixing proportions from gene expression data.
process_markers

Determines number of markers n_markers, marker list mrkrs, and gamma.
get_gamma

Determine gamma value by data type.
baseline_exprs

Estimate the offset terms.
shen_orr_ex

Example Subset of Shen-Orr deconvolution data set.
dtangle

Deconvolve cell type mixing proportions from gene expression data.
est_phats

Estimate the gene type proportions.
find_markers

Find marker genes for each cell type.