dupRadar (version 1.2.2)

cumulativeDuprateBarplot: Barplot showing the cumulative read counts fraction

Description

cumulativeDuprateBarplot Barplot showing the cumulative read counts fraction

Usage

cumulativeDuprateBarplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

The size of the windows used for plotting

...

Other params sent to barplot

Value

• nothing

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot
cumulativeDuprateBarplot(DupMat=dm)