dupRadar (version 1.2.2)

duprateExpBoxplot: Duplication rate ~ total reads per kilobase (RPK) boxplot

Description

duprateExpBoxplot Duplication rate ~ total reads per kilobase (RPK) boxplot

Usage

duprateExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

Expression bin seze for the boxplot

...

Other params sent to boxplot

Value

• nothing

Details

This function makes a boxplot showing the distribution of per gene duplication rate versus the reads per kilobase (RPK) inside gene expression bins.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# duprate boxplot
duprateExpBoxplot(DupMat=dm)