dupRadar (version 1.2.2)

duprateExpFit: Duplication rate ~ total read count fit model

Description

duprateExpDensPlot Duplication rate ~ total read count fit model

Usage

duprateExpFit(DupMat)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

Value

• The GLM and the coefficients of the fitted logit function

Details

Fit a Generalized Linear Model using a logit function between thegene duplication rate and the total read count.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# duprate plot
duprateExpFit(DupMat=dm)