dupRadar (version 1.2.2)

duprateExpIdentify: Identify genes plotted by duprateExpPlot

Description

duprateExpIdentify Identify genes plotted by duprateExpPlot

Usage

duprateExpIdentify(DupMat, idCol = "ID")

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

idCol

The column from the duplication matrix containing the labels

Value

• The identified points. x and y values match the ones from duprateExpPlot

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
duprateExpPlot(DupMat=dm)
duprateExpIdentify(DupMat=dm)