dupRadar (version 1.2.2)

getDupMatStats: Report duplication stats on regions

Description

getDupMatStats Report duplication stats based on the data calculated in the duplication matrix

Usage

getDupMatStats(DupMat)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

Value

• A data.frame containing the stats about the number of genes covered (1+ tags) and the number of genes containing duplicates (1+)

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
getDupMatStats(DupMat=dm)