dupRadar (version 1.2.2)

getDynamicRange: Dynamic range

Description

getDynamicRange Calculate the dynamic range of the RNAseq experiment

Usage

getDynamicRange(dm)

Arguments

dm

The duplication matrix calculated by analyzeDuprates

Value

• A list with 2 elements, containing the dynamic range counting all reads and the dynamic range after removing duplicates.

Details

This function calculates the dynamic range of the RNAseq eperiment

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# calculate the dynamic range
getDynamicRange(dm)