dupRadar (version 1.2.2)

readcountExpBoxplot: Barplot of percentage of reads falling into expression bins

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

The number of bars to be shown

...

Other parameters sent to barplot()

Value

• nothing Other parameters sent to barplot()

Details

This function makes a barplot of percentage of reads falling into expression bins

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)