dvir (version 3.3.0)

icmp: DVI dataset: A large reference pedigree

Description

DVI dataset based loosely on the ICMP 2017 workshop material https://www.few.vu.nl/~ksn560/Block-III-PartI-KS-ISFG2017.pdf (page 18). There are 3 female victims, 2 male victims and 6 missing persons of both sexes. We have renamed the individuals and simulated data for 13 CODIS markers (see Details).

Usage

icmp

Format

A dviData object with the following content:

• pm: A list of 5 singletons (victims).

• am: A reference pedigree with 6 genotyped members and 12 missing persons.

• missing: A vector containing the names of the missing persons.

Details

The 13 markers are, in order: CSF1PO, D3S1358, D5S818,D7S820, D8S1179, D13S317, D16S539, D18S51, D21S11, FGA, TH01, TPOX, and vWA.

Source code for the simulation, and a file containing the allele frequencies, can be found in the data-raw folder of the GitHub repository: https://github.com/magnusdv/dvir.

Examples

icmp

# plotDVI(icmp)

# Markers and allele frequencies
db = pedtools::getFreqDatabase(icmp$pm)
db