plot_gold_simulations

Visualise the simulations using the dimred

A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2021) <doi:10.1038/s41467-021-24152-2>.

Robrecht Cannoodt

dyngen

A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses

Wouter Saelens

plot_gold_simulations function

<dl><dt>model</dt>
<dd>A dyngen intermediary model for which the simulations have been run with <code>generate_cells()</code>.</dd>
<dt>detailed</dt>
<dd>Whether or not to colour according to each separate sub-edge in the gold standard.</dd>
<dt>mapping</dt>
<dd>Which components to plot.</dd>
<dt>highlight</dt>
<dd>Which simulation to highlight. If highlight == 0 then the gold simulation will be highlighted.</dd></dl>

Arguments

Visualise the simulations using the dimred — plot_gold_simulations

<dl>

<dt>model</dt>
<dd>A dyngen intermediary model for which the simulations have been run with <code>generate_cells()</code>.</dd>


<dt>detailed</dt>
<dd>Whether or not to colour according to each separate sub-edge in the gold standard.</dd>


<dt>mapping</dt>
<dd>Which components to plot.</dd>


<dt>highlight</dt>
<dd>Which simulation to highlight. If highlight == 0 then the gold simulation will be highlighted.</dd>

</dl>

plot_gold_simulations: Visualise the simulations using the dimred

Description

Usage

Value

Arguments

Examples