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dynplot (version 1.1.2)

Visualising Single-Cell Trajectories

Description

Visualise a single-cell trajectory as a graph or dendrogram, as a dimensionality reduction or heatmap of the expression data, or a comparison between two trajectories as a pairwise scatterplot or dimensionality reduction projection. Saelens and Cannoodt et al. (2019) .

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Install

install.packages('dynplot')

Monthly Downloads

69

Version

1.1.2

License

MIT + file LICENSE

Issues

10

Pull Requests

0

Stars

30

Forks

5

Maintainer

Robrecht Cannoodt

Last Published

December 7th, 2021

Functions in dynplot (1.1.2)

add_milestone_coloring

Add colouring to a set of milestones.
example_bifurcating

An example bifurcating dataset
example_linear

An example linear dataset
add_density_coloring

Color cells using a background density
plot_heatmap

Plot expression data along a trajectory
plot_onedim

Plot a trajectory as a one-dimensional set of connected segments
theme_graph

We like our plots clean
plot_linearised_comparison

Compare two trajectories as a pseudotime scatterplot
theme_clean

We like our plots clean
plot_dimred

Plot a trajectory in a (given) dimensionality reduction
plot_strip

Plot strip
plot_graph

Plot a trajectory as a graph
linearise_cells

Prepare a trajectory for linearised visualisation.
plot_dendro

Plot a trajectory as a dendrogram
plot_topology

Plot the topology of a trajectory
project_waypoints_coloured

Project the waypoints