dataCD

<p>The dataset consists of triplicate eDNA measurements for each of the 24 sampling sites, plus 13 direct observation measurements.</p>

datasets

Runs the eDITH (environmental DNA Integrating Transport
and Hydrology) model, which implements a mass balance of environmental DNA (eDNA)
transport at a river network scale coupled with a species distribution model
to obtain maps of species distribution. eDITH can work with both eDNA concentration
(e.g., obtained via quantitative polymerase chain reaction) or metabarcoding
(read count) data. Parameter estimation can be performed via Bayesian techniques
(via the 'BayesianTools' package) or optimization algorithms. An interface to the
'DHARMa' package for posterior predictive checks is provided. See Carraro and
Altermatt (2024) <doi:10.1111/2041-210X.14317> for a package introduction;
Carraro et al. (2018) <doi:10.1073/pnas.1813843115> and Carraro et al. (2020)
<doi:10.1038/s41467-020-17337-8> for methodological details.

Luca Carraro

eDITH

Model Transport of Environmental DNA in River Networks

Florian Altermatt

University of Zurich 

dataCD function

<p>A data frame containing location of sampling sites for the river Wigger (<code>dataCD$ID</code>), respective measured values (<code>dataCD$values</code>) (in mol m-3 for eDNA samples; in m-2 for direct surveys) and data type (<code>dataCD$values</code>) (<code>"e"</code> for eDNA samples; <code>"d"</code> for direct observations) for a given taxon.</p>

dataCD: eDNA concentration and direct observation data

Description

Usage

Arguments

Format