Internal eNetXplorer functions
eNetXplorerGaussian(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, cor_method, …)eNetXplorerBinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, binom_method,
binom_pos, fscore_beta, fold_distrib_fail.max, …)
eNetXplorerMultinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, multinom_method,
fscore_beta, fold_distrib_fail.max, …)
eNetXplorerCox <- function(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, cox_index, …)
plotMeasuredVsOOBNumer <- function (x, alpha.index, xlab, ylab, cex.lab, main,
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
instance.label.added.margin, col, …)
plotMeasuredVsOOBCateg <- function (x, alpha.index, xlab, ylab, cex.lab, main,
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
box.wex, box.range, box.col,
transparency, jitter, cex.pt, class.color, …)
plotFeatureCaterpillarMultinom(x, alpha.index, stat, feature.all,
feature.pval.thres, feature.set, feature.top.n, signif.code, xlab, ylab, main,
col.main, cex.main, line, subtitle, col.subtitle, line.subtitle, cex.subtitle,
cexRow, cex.lab, legend, …)
plotFeatureHeatmapMultinom(x, alpha.index, stat, feature.all, feature.pval.thres,
feature.set, feature.top.n, signif.code, xlab, ylab, main, col.main, cex.main,
line, col, breaks, scale, Rowv, Colv, na.color, cexRow, srtRow, cexCol, srtCol,
margins, key, key.title, dendogram, trace, notecol.freq, notecol.coef, notecex,
subtitle1, col.subtitle1, line.subtitle1, cex.subtitle1, subtitle2,
col.subtitle2, line.subtitle2, cex.subtitle2, …)
These functions are not part of the package application programming interface (API) and are not intended for use by end users. Functions
eNetXplorerGaussian, eNetXplorerBinomial, eNetXplorerMultinomial and eNetXplorerCox are called by function eNetXplorer to run models of
type linear, binomial, multinomial and Cox, respectively. Functions plotMeasuredVsOOBNumer and plotMeasuredVsOOBCateg are called by function plotMeasuredVsOOB to generate plots for linear and categorical models, respectively. For multinomial models, functions plotFeatureCaterpillarMultinom and plotFeatureHeatmapMultinom are called
by functions plotFeatureCaterpillar and plotFeatureHeatmap, respectively.