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easyPubMed (version 2.13)

Search and Retrieve Scientific Publication Records from PubMed

Description

Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.

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Version

Install

install.packages('easyPubMed')

Monthly Downloads

947

Version

2.13

License

GPL-2

Maintainer

Damiano Fantini

Last Published

March 29th, 2019

Functions in easyPubMed (2.13)

trim_address

Trim and Format Address Information
custom_grep

Retrieve Text Between XML Tags
get_pubmed_ids_by_fulltitle

Simple PubMed Record Search by Full-length Title
table_articles_byAuth

Extract Publication and Affiliation Data from PubMed Records
easyPubMed-package

Retrieve and Process Scientific Publication Records from Pubmed
PubMed_stopwords

PubMed Records about Bladder Research from Northwestern University
EPMsamples

PubMed Records downloaded and analyzed via easyPubMed
fetch_pubmed_data

Retrieve PubMed Data in XML or TXT Format
fetch_all_pubmed_ids

Retrieve All PubMed Record Identifiers Returned by a Query
get_pubmed_ids

Simple PubMed Record Search
article_to_df

Extract Data from a PubMed Record
articles_to_list

Cast PubMed Data into a List of Articles
batch_pubmed_download

Download PubMed Records in XML or TXT Format