available_tissue_type

This function extracts and returns a unique list of available tissue types
from the CellMarker2.0 database for a specified species.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

available_tissue_type function

<dl><dt>spc</dt>
<dd>A character string specifying the species (e.g., "Human" or "Mouse").</dd></dl>

Arguments

Retrieve Available Tissue Types for a Given Species — available_tissue_type

<dl>

<dt>spc</dt>
<dd>A character string specifying the species (e.g., "Human" or "Mouse").</dd>

</dl>

available_tissue_type: Retrieve Available Tissue Types for a Given Species

Description

Usage

Value

Arguments

Examples