list2graph

This function creates a graph from a named list, where the edges are determined
by the overlap between the elements of the list. Each node in the graph represents
an element of the list, and the weight of the edge between two nodes is the number
of overlapping elements between the two corresponding lists.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

list2graph function

<dl><dt>nodes</dt>
<dd>A named list where each element is a vector.</dd></dl>

Arguments

Convert a Named List into a Graph Based on Overlap — list2graph

<dl>

<dt>nodes</dt>
<dd>A named list where each element is a vector.</dd>

</dl>

list2graph: Convert a Named List into a Graph Based on Overlap

Description

Usage

Value

Arguments