plotMarkerDistribution

This function creates a dot plot displaying the distribution of a specified marker across
different tissues and cell types, based on data from the CellMarker2.0 database.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

plotMarkerDistribution function

<dl><dt>mkr</dt>
<dd>character, the name of the marker to be plotted.</dd></dl>

Arguments

Plot Distribution of a Marker Across Tissues and Cell Types — plotMarkerDistribution

<dl>

<dt>mkr</dt>
<dd>character, the name of the marker to be plotted.</dd>

</dl>

plotMarkerDistribution: Plot Distribution of a Marker Across Tissues and Cell Types

Description

Usage

Value

Arguments

Examples