plotORA

The <code>plotORA</code> function visualizes the results of an ORA (Over-Representation Analysis) test.
It generates a plot with customizable aesthetics for x, y, point size, and fill, with an option to flip the axes.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

plotORA function

<dl><dt>data</dt>
<dd>A data frame containing the ORA results to be visualized.</dd>
<dt>x</dt>
<dd>The column in <code>data</code> to map to the x-axis.</dd>
<dt>y</dt>
<dd>The column in <code>data</code> to map to the y-axis.</dd>
<dt>size</dt>
<dd>The column in <code>data</code> to map to the size of the points.</dd>
<dt>fill</dt>
<dd>The column in <code>data</code> to map to the fill color of the bars or points.
Use a constant value for a single category.</dd>
<dt>flip</dt>
<dd>A logical value indicating whether to flip the axes of the plot. Default is <code>FALSE</code>.</dd></dl>

Arguments

Visualization of ORA Test Results — plotORA

<dl>

<dt>data</dt>
<dd>A data frame containing the ORA results to be visualized.</dd>


<dt>x</dt>
<dd>The column in <code>data</code> to map to the x-axis.</dd>


<dt>y</dt>
<dd>The column in <code>data</code> to map to the y-axis.</dd>


<dt>size</dt>
<dd>The column in <code>data</code> to map to the size of the points.</dd>


<dt>fill</dt>
<dd>The column in <code>data</code> to map to the fill color of the bars or points.
Use a constant value for a single category.</dd>


<dt>flip</dt>
<dd>A logical value indicating whether to flip the axes of the plot. Default is <code>FALSE</code>.</dd>

</dl>

plotORA: Visualization of ORA Test Results

Description

Usage

Value

Arguments