plotRank

The <code>plotRank</code> function visualizes the ranked statistics of a GSEA (Gene Set Enrichment Analysis) analysis.
The function creates a plot where the x-axis represents the rank of each gene, and the y-axis shows
the corresponding ranked list metric.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

plotRank function

<dl><dt>stats</dt>
<dd>A numeric vector containing the ranked statistics from a GSEA analysis.</dd></dl>

Arguments

Visualization of GSEA Rank Statistics — plotRank

<dl>

<dt>stats</dt>
<dd>A numeric vector containing the ranked statistics from a GSEA analysis.</dd>

</dl>

plotRank: Visualization of GSEA Rank Statistics

Description

Usage

Value

Arguments