easybio

easybio-package

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) tools:::Rd_expr_doi(" 10.1093/nar/gkac947")). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<a href="https://portal.gdc.cancer.gov/">https://portal.gdc.cancer.gov/</a> and GEO<a href="https://www.ncbi.nlm.nih.gov/geo/">https://www.ncbi.nlm.nih.gov/geo/</a> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) tools:::Rd_expr_doi(" 10.1101/2024.09.14.609619") for more details.

internal

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

easybio-package function

Maintainer: Wei Cui <a href="/link/m2c.w%40outlook.com?package=easybio&version=1.2.2" data-mini-rdoc="easybio::m2c.w@outlook.com">m2c.w@outlook.com</a> (<a href="https://orcid.org/0009-0004-8315-5899">ORCID</a>) [copyright holder]

Author

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) tools:::Rd_expr_doi(" 10.1093/nar/gkac947")). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<a href='https://portal.gdc.cancer.gov/'>https://portal.gdc.cancer.gov/</a> and GEO<a href='https://www.ncbi.nlm.nih.gov/geo/'>https://www.ncbi.nlm.nih.gov/geo/</a> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) tools:::Rd_expr_doi(" 10.1101/2024.09.14.609619") for more details.

easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit — easybio-package

Maintainer: Wei Cui <a href='mailto:m2c.w@outlook.com'>m2c.w@outlook.com</a> (<a href='https://orcid.org/0009-0004-8315-5899'>ORCID</a>) [copyright holder]

easybio-package: easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit

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