plotPossibleCell

This function creates a dot plot to visualize the distribution of possible cell types
based on the results from the <code>matchCellMarker2()</code> function, utilizing data from the CellMarker2.0 database.

Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.

Wei Cui

easybio

Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit

plotPossibleCell function

<dl><dt>marker</dt>
<dd>data.table, the result from the <code>matchCellMarker2()</code> function.</dd>
<dt>min.uniqueN</dt>
<dd>integer, the minimum number of unique marker genes that must be matched for a cell type to be included in the plot. Default is 2.</dd></dl>

Arguments

Plot Possible Cell Distribution Based on matchCellMarker2() Results — plotPossibleCell

<dl>

<dt>marker</dt>
<dd>data.table, the result from the <code>matchCellMarker2()</code> function.</dd>


<dt>min.uniqueN</dt>
<dd>integer, the minimum number of unique marker genes that must be matched for a cell type to be included in the plot. Default is 2.</dd>

</dl>

plotPossibleCell: Plot Possible Cell Distribution Based on matchCellMarker2() Results

Description

Usage

Value

Arguments