qqplot2

Second stage plotting function which accepts dataframe generated by
<code><a href="/link/qqplot()?package=easylabel&version=0.3.3" data-mini-rdoc="easylabel::qqplot()">qqplot()</a></code>. This can be used to avoid repeating computation of the QQ plot
values.

Interactive labelling of scatter plots, volcano plots and
Manhattan plots using a 'shiny' and 'plotly' interface. Users can hover
over points to see where specific points are located and click points
on/off to easily label them. Labels can be dragged around the plot to place
them optimally. Plots can be exported directly to PDF for publication. For
plots with large numbers of points, points can optionally be rasterized as a
bitmap, while all other elements (axes, text, labels & lines) are preserved
as vector objects. This can dramatically reduce file size for plots with
millions of points such as Manhattan plots, and is ideal for publication.

Myles Lewis

easylabel

Interactive Scatter Plot and Volcano Plot Labels

Katriona Goldmann

Cankut Cubuk

qqplot2 function

<dl><dt>df</dt>
<dd>A dataframe generated by <code><a href="/link/qqplot()?package=easylabel&version=0.3.3" data-mini-rdoc="easylabel::qqplot()">qqplot()</a></code></dd>
<dt>scheme</dt>
<dd>Vector of 2 colours for plotting non-significant and
significant SNPs</dd>
<dt>...</dt>
<dd>Optional plotting arguments passed to <code><a href="/link/plot()?package=easylabel&version=0.3.3" data-mini-rdoc="easylabel::plot()">plot()</a></code></dd></dl>

Arguments

Second stage plotting function which accepts dataframe generated by
<code><a href='https://rdrr.io/r/stats/qqnorm.html'>qqplot()</a></code>. This can be used to avoid repeating computation of the QQ plot
values.

Log QQ p-value plot (2nd stage) — qqplot2

<dl>

<dt>df</dt>
<dd>A dataframe generated by <code><a href='https://rdrr.io/r/stats/qqnorm.html'>qqplot()</a></code></dd>


<dt>scheme</dt>
<dd>Vector of 2 colours for plotting non-significant and
significant SNPs</dd>


<dt>...</dt>
<dd>Optional plotting arguments passed to <code><a href='https://rdrr.io/r/graphics/plot.default.html'>plot()</a></code></dd>

</dl>

qqplot2: Log QQ p-value plot (2nd stage)

Description

Usage

Value

Arguments