calc_alpha

The <code>calc_alpha()</code> is used to perform alpha diversity analysis and create
<code>alpha-class</code>. This function can be used to calculate various alpha
diversity indices such as <code>Chao1</code>, <code>ACE</code>, <code>Shannon</code>, <code>Simpson</code>,
etc.

Provides a built-in Nemaplex database for nematodes,
which can be used to search for various nematodes.
Also supports various nematode community and functional
analyses such as nematode diversity, maturity index, metabolic footprint,
and functional guild. The methods are based on
<https://shiny.wur.nl/ninja/>, Bongers, T. (1990)
<doi:10.1007/BF00324627>, Ferris, H. (2010)
<doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022)
<doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al.
(2019) <doi:10.1038/s41586-019-1418-6>.

Wang Kunguang

easynem

Nematode Community Analysis

calc_alpha function

<dl><dt>data</dt>
<dd>An <code>easynem-class</code> data.</dd>
<dt>...</dt>
<dd>Other parameters for <code>diversity</code>, <code>simpson.unb</code>,
<code>fisher.alpha</code>, <code>specnumber</code>, and <code>estimateR</code>.</dd></dl>

Arguments

Alpha diversity analysis, generating alpha-class — calc_alpha

<dl>

<dt>data</dt>
<dd>An <code>easynem-class</code> data.</dd>


<dt>...</dt>
<dd>Other parameters for <code>diversity</code>, <code>simpson.unb</code>,
<code>fisher.alpha</code>, <code>specnumber</code>, and <code>estimateR</code>.</dd>

</dl>

calc_alpha: Alpha diversity analysis, generating alpha-class

Description

Usage

Value

Arguments

Details

See Also

Examples