easynem (version 1.0.3)

calc_mf: Calculating the metabolic footprint of nematodes (single factor)

Description

Metabolic footprints quantify the amplitude of Carbon utilisation by different food web components. The point in the middle of a rhombus represents the intersection of EI and SI and length of vertical and horizontal axes of the rhombus corresponds to the footprints of enrichment and structure components respectively.

Usage

calc_mf(data, .group)

Value

A mf-class object that stores the desired visualization results.

Arguments

data

A nemindex-class object.

.group

The group variable.

Details

To facilitate code interpretation, it is recommended to use the pipe symbol |> to connect functions:

nem_fun <- nem |> calc_nemindex() |> calc_mf(con_crop)

References

• https://shiny.wur.nl/ninja/

• Ferris, Howard. "Form and function: metabolic footprints of nematodes in the soil food web." European Journal of Soil Biology 46.2 (2010): 97-104.

See Also

Other functions in this R package for data calculations: calc_beta2, calc_compare, calc_compare2, calc_beta, calc_alpha, calc_nemindex, calc_funguild, calc_funguild2, calc_mf2, calc_ter, calc_ter2, calc_ef, calc_ef2.

Examples

nem <- read_nem2(tab = nemtab, tax = nemtax, meta = nemmeta)
nem_index <- nem |> calc_nemindex() |> calc_mf(Treatments)
nem_index