easynem-class

Integrate the nematode abundance table, nematode classification table, and
experimental design table into an <code>easynem-class</code>, which makes it easier to
filter and manage nematode data, and easier to link to the nematode database
and conduct subsequent analysis.

Provides a built-in Nemaplex database for nematodes,
which can be used to search for various nematodes.
Also supports various nematode community and functional
analyses such as nematode diversity, maturity index, metabolic footprint,
and functional guild. The methods are based on
<https://shiny.wur.nl/ninja/>, Bongers, T. (1990)
<doi:10.1007/BF00324627>, Ferris, H. (2010)
<doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022)
<doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al.
(2019) <doi:10.1038/s41586-019-1418-6>.

Wang Kunguang

easynem

Nematode Community Analysis

easynem-class function

<dl>
<dt><code>tab</code></dt>
<dd>A single object of nematode abundance table.</dd></dl>
<dt><code>tax</code></dt>
<dd>A single object of nematode classification table.</dd>
<dt><code>meta</code></dt>
<dd>A single object of experimental design table.</dd>

Slots

The main experiment-level class for easynem data — easynem-class

<dl>
<dt><code>tab</code></dt>
<dd>A single object of nematode abundance table.</dd>


<dt><code>tax</code></dt>
<dd>A single object of nematode classification table.</dd>


<dt><code>meta</code></dt>
<dd>A single object of experimental design table.</dd>


</dl>

easynem-class: The main experiment-level class for easynem data

Description

Arguments

Slots

Details

See Also