easynem (version 1.0.3)

filter_num: Filter easynem's tab by discovery rate or abundance

Description

The filter_num() is used to filter the rows of the easynem tab by abundance or discovery rate. If num>1, filter by abundance, num is the lowest abundance of the tab; if num<1, filter by discovery rate, num is the lowest discovery rate of the tab.

Usage

filter_num(data, num)

Value

An easynem-class data.The results of tab, tax, and meta are the retention values after filtering the tab by abundance or discovery rate.

Arguments

data

An easynem-class data.

num

Filter threshold value. If num>1, filter by abundance, num is the lowest abundance of the tab; if num<1, filter by discovery rate, num is the lowest discovery rate of the tab.

Details

To facilitate code interpretation, it is recommended to use the pipe symbol |> to connect functions:

nem_filter <- nem |> filter_num(target = meta, num = 0.85)

nem_filter <- nem |> filter_num(target = meta, num = 500)

See Also

Other functions in this package for filtering and transforming data sets: filter_name, trans_formula, trans_formula_v, trans_name, trans_norm, trans_rare, trans_combine

Examples

nem <- read_nem2(tab = nemtab, tax = nemtax, meta = nemmeta)
nem_filter <- nem |> filter_num(num = 0.9)
show(nem_filter)
nem_filter <- nem |> filter_num(num = 1000)
show(nem_filter)