Nematode taxonomy table corresponding to the nematode taxonomy ID in the nematode abundance table. The first column of this table corresponds to the first column in nemtab. If calculations related to nematode communities are to be performed, the taxonomy table should be accurate to at least the family and genus level. The variables are as follows:
nemtaxA tibble with 46 rows and 5 variables:
Taxonomic ID of nematodes.This column corresponds to the first column of nemtab and cannot have duplicate values.
Classification of nematodes at the kingdom level.
Classification of nematodes at the Phylum level.When reading in data, this R package will determine whether the table is a nematode classification table based on whether the Phylum column in the classification table contains Nematoda. Therefore, if you want to use this package to analyze the nematode community structure, the Phylum in the classification table must be Nematoda, otherwise the read-in data will not be automatically associated with the nematode database.
Classification of nematodes at the Family level.
Classification of nematodes at the Genus level.
This dataset referenced from "Li Q-m, Qi X-X, Zhang H-f, Zhang Y-j, Liu H-m, Zhao J-n, Yang D and Wang H (2023) Responses of soil nematode abundance and food web to cover crops in a kiwifruit orchard. Front. Plant Sci. 14:1173157. doi: 10.3389/fpls.2023.1173157"