easynem (version 1.0.3)

read_nem: Build easynem-class objects from their csv file

Description

read_nem() is a constructor method. This is the main method suggested for constructing an experiment-level (easynem-class) object from its component data (component data: tab, tax, meta).

Usage

read_nem(tab = 0, tax = 0, meta = 0, ...)

Value

An easynem object. The components in the class are interconnected to facilitate the subsequent screening and management of nematode data. When this class is generated, it will automatically check whether there is nematode information in the species classification table. If not, it will not be associated with the nematode database.

Arguments

tab

Nematode abundance table.

tax

Nematode abundance table.

meta

Experimental design table.

...

Other default parameters for read_csv function.

See Also

read_nem2

Examples

easynem <- read_nem(tab = easynem_example("nemtab.csv"),
                    tax = easynem_example("nemtax.csv"),
                    meta = easynem_example("nemmeta.csv"))
show(easynem)