read_nem2

<code>read_nem2()</code> is a constructor method. This is the main method suggested
for constructing an experiment-level (<code>easynem-class</code>) object
from its tibble type object (component data: <code>tab</code>, <code>tax</code>, <code>meta</code>).

Provides a built-in Nemaplex database for nematodes,
which can be used to search for various nematodes.
Also supports various nematode community and functional
analyses such as nematode diversity, maturity index, metabolic footprint,
and functional guild. The methods are based on
<https://shiny.wur.nl/ninja/>, Bongers, T. (1990)
<doi:10.1007/BF00324627>, Ferris, H. (2010)
<doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022)
<doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al.
(2019) <doi:10.1038/s41586-019-1418-6>.

Wang Kunguang

easynem

Nematode Community Analysis

read_nem2 function

<dl><dt>tab</dt>
<dd>Nematode abundance table.</dd>
<dt>tax</dt>
<dd>Nematode abundance table.</dd>
<dt>meta</dt>
<dd>Experimental design table.</dd>
<dt>...</dt>
<dd>Other default parameters for <code><a href="https://readr.tidyverse.org/reference/read_delim.html">read_csv</a></code> function.</dd></dl>

Arguments

Build easynem-class objects from their tibble type object — read_nem2

<dl>

<dt>tab</dt>
<dd>Nematode abundance table.</dd>


<dt>tax</dt>
<dd>Nematode abundance table.</dd>


<dt>meta</dt>
<dd>Experimental design table.</dd>


<dt>...</dt>
<dd>Other default parameters for <code><a href='https://readr.tidyverse.org/reference/read_delim.html'>read_csv</a></code> function.</dd>

</dl>

read_nem2: Build easynem-class objects from their tibble type object

Description

Usage

Value

Arguments

See Also

Examples