trans_norm

The <code>trans_norm()</code> is an extension of the <code>decostand</code>
function of the vegan package for <code>easynem-class</code> data, which is
used to standardize the nematode abundance table to reduce the order of magnitude
differences of nematodes in each treatment.

Provides a built-in Nemaplex database for nematodes,
which can be used to search for various nematodes.
Also supports various nematode community and functional
analyses such as nematode diversity, maturity index, metabolic footprint,
and functional guild. The methods are based on
<https://shiny.wur.nl/ninja/>, Bongers, T. (1990)
<doi:10.1007/BF00324627>, Ferris, H. (2010)
<doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022)
<doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al.
(2019) <doi:10.1038/s41586-019-1418-6>.

Wang Kunguang

easynem

Nematode Community Analysis

trans_norm function

<dl><dt>data</dt>
<dd>An <code>easynem-class</code> data.</dd>
<dt>method</dt>
<dd>Standardization method. For details, refer to the
<code>decostand</code> function of the vegan package.</dd>
<dt>MARGIN</dt>
<dd>Margin, <code>1 = rows</code>, and <code>2 = columns</code> of easynem's tab.
Default <code>MARGIN = 2</code>.</dd>
<dt>...</dt>
<dd>Other parameters of the <code>decostand</code> function of
the vegan package.</dd></dl>

Arguments

Normalizing the nematode abundance table — trans_norm

<dl>

<dt>data</dt>
<dd>An <code>easynem-class</code> data.</dd>


<dt>method</dt>
<dd>Standardization method. For details, refer to the
<code>decostand</code> function of the vegan package.</dd>


<dt>MARGIN</dt>
<dd>Margin, <code>1 = rows</code>, and <code>2 = columns</code> of easynem's tab.
Default <code>MARGIN = 2</code>.</dd>


<dt>...</dt>
<dd>Other parameters of the <code>decostand</code> function of
the vegan package.</dd>

</dl>

trans_norm: Normalizing the nematode abundance table

Description

Usage

Value

Arguments

Details

See Also

Examples