ebvcube (version 0.5.2)

ebv_create: Create an EBV netCDF

Description

Create the core structure of the EBV netCDF based on the json from the EBV Data Portal. Data will be added afterwards using ebv_add_data().

Usage

ebv_create(
  jsonpath,
  outputpath,
  entities,
  epsg = 4326,
  extent = c(-180, 180, -90, 90),
  resolution = c(1, 1),
  timesteps = NULL,
  fillvalue,
  prec = "double",
  sep = ",",
  force_4D = TRUE,
  overwrite = FALSE,
  verbose = TRUE
)

Value

Creates the netCDF file at the 'outputpath' location.

Arguments

jsonpath

Character. Path to the json file downloaded from the EBV Data Portal. Login to the page and click on 'Uploads' and 'New Upload' to start the process.

outputpath

Character. Set path where the netCDF file should be created.

entities

Character string or vector of character strings. In case of single character string: Path to the csv table holding the entity names. Default: comma-separated delimiter, else change the sep argument accordingly. Should have only one column, each row is the name of one entity. In case of vector of character strings: Vector holding the entity names.

epsg

Integer. Default: 4326 (WGS84). Defines the coordinate reference system via the corresponding epsg code.

extent

Numeric. Default: c(-180,180,-90,90). Defines the extent of the data: c(xmin, xmax, ymin, ymax).

resolution

Numerical. Vector of two numerical values defining the longitudinal and latitudinal resolution of the pixel: c(lon,lat).

timesteps

Character. Vector of the timesteps in the dataset. Default: NULL - in this case the time will be calculated from the start-, endpoint and temporal resolution given in the metadata file (json). Else, the dates must be given in in ISO format 'YYYY-MM-DD' or shortened 'YYYY' in case of yearly timesteps.

fillvalue

Numeric. Value of the missing data (NoData value) in the array. Has to be a single numeric value or NA.

prec

Character. Default: 'double'. Precision of the data set. Valid options: 'short' 'integer' 'float' 'double' 'char' 'byte'.

sep

Character. Default: ','. If the delimiter of the csv specifying the entity-names differs from the default, indicate here.

force_4D

Logical. Default is TRUE. If the argument is TRUE, there will be 4D cubes (lon, lat, time, entity) per metric. If this argument is changed to FALSE, there will be 3D cubes (lon, lat, time) per entity (per metric). So the latter yields a higher amount of cubes and does not bundle all information per metric. In the future the standard will be restricted to the 4D version. Recommendation: go with the 4D cubes!

overwrite

Logical. Default: FALSE. Set to TRUE to overwrite the output file defined by 'outputpath'.

verbose

Logical. Default: TRUE. Turn off additional prints by setting it to FALSE.

Examples

#set path to JSON file
json <- system.file(file.path("extdata","metadata.json"), package="ebvcube")
#set output path of the new EBV netCDF
out <- file.path(system.file(package='ebvcube'),"extdata","sCAR_new.nc")
#set path to the csv holding the entity names
entities <- file.path(system.file(package='ebvcube'),"extdata","entities.csv")

#create new EBV netCDF
if (FALSE) {
ebv_create(jsonpath = json, outputpath = out, entities = entities,
           fillvalue=-3.4E38)
}