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ecodist (version 1.1.3)

Dissimilarity-based functions for ecological analysis

Description

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

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Version

Install

install.packages('ecodist')

Monthly Downloads

5,382

Version

1.1.3

License

GPL version 2 or newer

Maintainer

Sarah Goslee

Last Published

October 30th, 2023

Functions in ecodist (1.1.3)

bcdist

Bray-Curtis distance
bump

Nine-bump spatial pattern
graze

Site information and grazed vegetation data.
corgen

Generate correlated data
plot.vf

Plots fitted vectors onto an ordination diagram
cor2m

Generates a correlation table between the variables of 2 matrices
pco

Principal coordinates analysis
distance

Calculate dissimilarity/distance metrics
ecodist-package

Dissimilarity-based functions for ecological analysis
mgram

Mantel correlogram
permresults

Mantel test results for number of permutations, correlation and dataset size.
mantel

Mantel test
lower

Lower-triangular matrix
full

Full symmetric matrix
pmgram

Partial Mantel correlogram
nmds.min

Find minimum stress configuration
plot.mgram

Plot a Mantel correlogram
residuals.mgram

Residuals of a Mantel correlogram
vf

Vector fitting
crosstab

Data formatting
fixdmat

Distance matrix conversion
nmds

Non-metric multidimensional scaling