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ecodist (version 1.1.5)

Dissimilarity-based functions for ecological analysis

Description

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

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Version

Install

install.packages('ecodist')

Monthly Downloads

6,362

Version

1.1.5

License

GPL version 2 or newer

Maintainer

Sarah Goslee

Last Published

October 30th, 2023

Functions in ecodist (1.1.5)

MRM

Multiple Regression on distance Matrices
graze

Site information and grazed vegetation data.
pmgram

Partial Mantel correlogram
bcdist

Bray-Curtis distance
crosstab

Data formatting
plot.mgram

Plot a Mantel correlogram
nmds.min

Find minimum stress configuration
corgen

Generate correlated data
full

Full symmetric matrix
mgram

Mantel correlogram
permresults

Mantel test results for number of permutations, correlation and dataset size.
distance

Calculate dissimilarity/distance metrics
plot.vf

Plots fitted vectors onto an ordination diagram
cor2m

Generates a correlation table between the variables of 2 matrices
mantel

Mantel test
fixdmat

Distance matrix conversion
vf

Vector fitting
ecodist-package

Dissimilarity-based functions for ecological analysis
pco

Principal coordinates analysis
bump

Nine-bump spatial pattern
lower

Lower-triangular matrix
nmds

Non-metric multidimensional scaling
residuals.mgram

Residuals of a Mantel correlogram