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ecodist (version 1.2.7)

Dissimilarity-based functions for ecological analysis

Description

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

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Version

Install

install.packages('ecodist')

Monthly Downloads

4,196

Version

1.2.7

License

GPL (>= 2)

Maintainer

Sarah Goslee

Last Published

March 22nd, 2012

Functions in ecodist (1.2.7)

mgram

Mantel correlogram
plot.vf

Plots fitted vectors onto an ordination diagram
fixdmat

Distance matrix conversion
lower

Lower-triangular matrix
cor2m

Generates a correlation table between the variables of 2 matrices
graze

Site information and grazed vegetation data.
mantel

Mantel test
full

Full symmetric matrix
crosstab

Data formatting
pco

Principal coordinates analysis
permresults

Mantel test results for number of permutations, correlation and dataset size.
ecodist-package

Dissimilarity-based functions for ecological analysis
pmgram

Partial Mantel correlogram
plot.mgram

Plot a Mantel correlogram
vf

Vector fitting
corgen

Generate correlated data
MRM

Multiple Regression on distance Matrices
nmds

Non-metric multidimensional scaling
distance

Calculate dissimilarity/distance metrics
nmds.min

Find minimum stress configuration
bcdist

Bray-Curtis distance
bump

Nine-bump spatial pattern
residuals.mgram

Residuals of a Mantel correlogram