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ecodist (version 1.2.9)

Dissimilarity-based functions for ecological analysis

Description

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

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Version

Install

install.packages('ecodist')

Monthly Downloads

4,252

Version

1.2.9

License

GPL (>= 2)

Maintainer

Sarah Goslee

Last Published

December 3rd, 2013

Functions in ecodist (1.2.9)

crosstab

Data formatting
full

Full symmetric matrix
mgram

Mantel correlogram
plot.vf

Plots fitted vectors onto an ordination diagram
bump

Nine-bump spatial pattern
graze

Site information and grazed vegetation data.
distance

Calculate dissimilarity/distance metrics
lower

Lower-triangular matrix
bcdist

Bray-Curtis distance
pmgram

Partial Mantel correlogram
mantel

Mantel test
nmds

Non-metric multidimensional scaling
pco

Principal coordinates analysis
residuals.mgram

Residuals of a Mantel correlogram
corgen

Generate correlated data
MRM

Multiple Regression on distance Matrices
vf

Vector fitting
plot.mgram

Plot a Mantel correlogram
cor2m

Generates a correlation table between the variables of 2 matrices
permresults

Mantel test results for number of permutations, correlation and dataset size.
nmds.min

Find minimum stress configuration
fixdmat

Distance matrix conversion
ecodist-package

Dissimilarity-based functions for ecological analysis