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ecodist (version 2.0.1)

Dissimilarity-Based Functions for Ecological Analysis

Description

Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.

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Version

Install

install.packages('ecodist')

Monthly Downloads

5,395

Version

2.0.1

License

GPL (>= 2)

Maintainer

Sarah Goslee

Last Published

July 13th, 2017

Functions in ecodist (2.0.1)

distance

Calculate dissimilarity/distance metrics
corgen

Generate correlated data
crosstab

Data formatting
MRM

Multiple Regression on distance Matrices
addord

Fit new points to an existing NMDS configuration.
bump.pmgram

Nine-bump spatial pattern
cor2m

Two-matrix correlation table
ecodist-package

Dissimilarity-Based Functions for Ecological Analysis
fixdmat

Distance matrix conversion
full

Full symmetric matrix
graze

Site information and grazed vegetation data.
iris.fit

Example of adding to an ordination
residuals.mgram

Residuals of a Mantel correlogram
vf

Vector fitting
xmgram

Cross-Mantel correlogram
iris.nmds

Example for nmds
iris.vf

Example for vector fitting on ordination
plot.mgram

Plot a Mantel correlogram
plot.nmds

Plot information about NMDS ordination
iris.vfrot

Example for vector fitting on rotated ordination
lower

Lower-triangular matrix
mgroup

Mantel test for groups
min.nmds

Find minimum stress configuration
plot.vf

Plots fitted vectors onto an ordination diagram
pmgram

Partial Mantel correlogram
z.z1

Example for pmgram
z.no

Example for pmgram
xdistance

Cross-distance between two datasets.
xmantel

Cross-Mantel test
bcdist

Bray-Curtis distance
bump

Nine-bump spatial pattern
mantel

Mantel test
mgram

Mantel correlogram
nmds

Non-metric multidimensional scaling
pco

Principal coordinates analysis