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ecodist (version 2.0.1)
Dissimilarity-Based Functions for Ecological Analysis
Description
Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.
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install.packages('ecodist')
Monthly Downloads
5,346
Version
2.0.1
License
GPL (>= 2)
Maintainer
Sarah Goslee
Last Published
July 13th, 2017
Functions in ecodist (2.0.1)
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distance
Calculate dissimilarity/distance metrics
corgen
Generate correlated data
crosstab
Data formatting
MRM
Multiple Regression on distance Matrices
addord
Fit new points to an existing NMDS configuration.
bump.pmgram
Nine-bump spatial pattern
cor2m
Two-matrix correlation table
ecodist-package
Dissimilarity-Based Functions for Ecological Analysis
fixdmat
Distance matrix conversion
full
Full symmetric matrix
graze
Site information and grazed vegetation data.
iris.fit
Example of adding to an ordination
residuals.mgram
Residuals of a Mantel correlogram
vf
Vector fitting
xmgram
Cross-Mantel correlogram
iris.nmds
Example for nmds
iris.vf
Example for vector fitting on ordination
plot.mgram
Plot a Mantel correlogram
plot.nmds
Plot information about NMDS ordination
iris.vfrot
Example for vector fitting on rotated ordination
lower
Lower-triangular matrix
mgroup
Mantel test for groups
min.nmds
Find minimum stress configuration
plot.vf
Plots fitted vectors onto an ordination diagram
pmgram
Partial Mantel correlogram
z.z1
Example for pmgram
z.no
Example for pmgram
xdistance
Cross-distance between two datasets.
xmantel
Cross-Mantel test
bcdist
Bray-Curtis distance
bump
Nine-bump spatial pattern
mantel
Mantel test
mgram
Mantel correlogram
nmds
Non-metric multidimensional scaling
pco
Principal coordinates analysis