ecospat.ESM.EnsembleModeling Ensemble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs ecospat.CCV.createDataSplitTable Creates a DataSplitTable for usage in ecospat.ccv.modeling.
ecospat.ESM.EnsembleProjection Ensemble of Small Models: Projects Calibrated ESMs Into New Space Or Time. ecospat.CCV.communityEvaluation.bin Calculates a range of community evaluation metrics based on different thresholding techniques. Spatial Ecology Miscellaneous Methods ecospat.ESM.EnsembleEvaluation Ensemble of Small Models: Evaluation via the Pooling procedure ecospat.CCV.communityEvaluation.prob Evaluates community predictions directly on the probabilities (i.e., threshold independent) Runs indivudual species distribuion models with SDMs or ESMs
Community Evaluation Pairwise co-occurrence Analysis with calculation of the C-score index. SESAM Probability Ranking Rule Prediction Mean Calculate An Adjusted D2 Calculate Boyce Index Thresholds for Ensemble of Small Models Generate Binary Models Produce response plots for ESMs Variable contribution in ESM Ensemble of Small Models: Projects Simple Bivariate Models Into New Space Or Time Ensemble of Small Models: Calibration of Simple Bivariate Models GBM Cross Validation Correlation Plot Calibration And Evaluation Dataset Calculate Phylogenetic Diversity Measures Maxent Cross Validation GLM Cross Validation Species Co-Occurrences A climate analogy setection tool for the modeling of species distributions Maxent Variable Importance Cohen's Kappa Constrained Co-Occurrence Analysis. Maximum Kappa Dynamic Occurrence Densities Grid Maximum TSS Minimum Dispersal Routes) Delineation of the distribution's margin and its uncertainty RandomForest Cross Validation ecospat.mantel.correlogram Mantel Correlogram Make Data Frame MESS Niche Expansion, Stability, and Unfilling ecospat.niche.dynIndexProjGeo Projection of niche dynamic indices to the Geography Calculate Niche Overlap ecospat.niche.equivalency.test Niche Equivalency Test Niche position and niche breadth) Niche position and niche breadth) Plot MESS Model Evaluation For A Given Threshold Value Plot Niche Minimal Predicted Area GLM Permutation Function Extract occupied patches of a species in geographic space.) ecospat.occ.desaggregation Species Occurrences Desaggregation Plot Variables Contribution Plot Kappa Number Of Predictors ecospat.poolingEvaluation Evaluation of species distribution models using the pooling procedure Plot True skill statistic (TSS) Random Ecologically Stratified Sampling of equal numbers Sample Environmental Variables Test Data For The Ecospat package ecospat.plot.overlap.test Plot Overlap Test Niche Categories and Species Density Draw Centroid Arrows Test Environmental Rasters for The Ecospat package Random Ecologically Stratified Sampling of propotional numbers Projection of Occurrence Densities to the Geography ecospat.niche.similarity.test Niche Similarity Test Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species Test Data For The ecospat.mdr function Reclassifying grids function ecospat.rand.pseudoabsences Sample Pseudo-Absences Quantification of the range size of a species using habitat suitability maps and IUCN criteria) Test Data For The Niche Overlap Analysis Test Tree For The Ecospat package Variation Partitioning For GLM Or GAM Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species Test AVS Dataset For The Ecospat package