Calculates values for Cohen's Kappa along different thresholds, considering this time 0.01 increments (i.e. 99 thresholds).
ecospat.max.kappa(Pred, Sp.occ)
Return values for Cohen's Kappa for 99 thresholds at 0.01 increments.
A vector of predicted probabilities
A vector of binary observations of the species occurrence
Antoine Guisan antoine.guisan@unil.ch with contributions of Luigi Maiorano luigi.maiorano@gmail.com and Valeria Di Cola valeria.dicola@unil.ch.
Liu, C., P.M. Berry, T.P. Dawson, and R.G. Pearson. 2005. Selecting thresholds of occurrence in the prediction of species distributions. Ecography, 28, 385-393.
ecospat.meva.table, ecospat.max.tss, ecospat.plot.tss, ecospat.cohen.kappa, ecospat.plot.kappa
ecospat.meva.table
ecospat.max.tss
ecospat.plot.tss
ecospat.cohen.kappa
ecospat.plot.kappa
# \donttest{ Pred <- ecospat.testData$glm_Agrostis_capillaris Sp.occ <- ecospat.testData$Agrostis_capillaris kappa100 <- ecospat.max.kappa(Pred, Sp.occ) # }
Run the code above in your browser using DataLab