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ecotox (version 1.3.0)

LT: Lethal Time

Description

Calculates lethal time (LT) and its fiducial confidence limits (CL) using a probit analysis according to Finney 1971, Wheeler et al. 2006, and Robertson et al. 2007. LT() is deprecated use LT_probit() for probit analysis.

Usage

LT(formula, data, p = seq(1, 99, 1), weights = NULL, het_sig = NULL, conf_level = NULL)

Arguments

formula

an object of class formula or one that can be coerced to that class: a symbolic description of the model to be fitted.

data

an optional data frame, list or environment (or object coercible by as.data.frame to a data frame) containing the variables in the model. If not found in data, the variables are taken from environment(formula), typically the environment from which LT is called.

p

Lethal time (LT) values for given p, example will return a LT50 value if p equals 50. If more than one LT value desired specify by creating a vector.

weights

vector of 'prior weights' to be used in the fitting process. Should be a numeric vector, if set to NULL weights will not be used.

het_sig

signficance level from person's goodness-of-fit test that is used to decide if a hetrogentiy factor is used. NULL is set to 0.15.

conf_level

Adjust confidence level as necessary or NULL set at 0.95.

Value

Returns a data frame with predicted LT for given p level, lower CL (LCL), upper CL (UCL), LCL and UCL distance away from LT (LCL_dis & UCL_dis; important for creating a plot), Pearson's goodness-of-fit test, slope, intercept, slope and intercept p values and standard error, and LT variance.

References

Finney, D.J., 1971. Probit Analysis, Cambridge University Press, Cambridge, England, ISBN: 052108041X

Wheeler, M.W., Park, R.M., and Bailey, A.J., 2006. Comparing median lethal concentration values using confidence interval overlap or ratio tests, Environ. Toxic. Chem. 25(5), 1441-1444.10.1897/05-320R.1

Robertson, J.L., Savin, N.E., Russell, R.M. and Preisler, H.K., 2007. Bioassays with arthropods. CRC press. ISBN: 9780849323317

Examples

Run this code
# NOT RUN {
#This function is deprecated use LT_probit() to calculate lethal times.

# }

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