DGEGLM-class

show,DGEGLM-method

A list-based S4 class for storing results of a GLM fit to each gene in a DGE dataset.

classes

The edge package implements methods for carrying out differential
    expression analyses of genome-wide gene expression studies. Significance testing
    using the optimal discovery procedure and generalized likelihood ratio tests
    (equivalent to F-tests and t-tests) are implemented for general study designs.
    Special functions are available to facilitate the analysis of common study
    designs, including time course experiments. Other packages such as snm, sva,
    and qvalue are integrated in edge to provide a wide range of tools for gene
    expression analysis.

John D Storey

edge

Extraction of Differential Gene Expression

DGEGLM-class function

This class inherits directly from class <code>list</code> so any operation appropriate for lists will work on objects of this class.The dimensions, row names and column names of a <code>DGEGLM</code> object are defined by those of the dataset, see <code><a href="/link/dim.DGEGLM?package=edge&version=2.4.2" rd-options="" data-mini-rdoc="edge::dim.DGEGLM">dim.DGEGLM</a></code> or <code><a href="/link/dimnames.DGEGLM?package=edge&version=2.4.2" rd-options="" data-mini-rdoc="edge::dimnames.DGEGLM">dimnames.DGEGLM</a></code>.<code>DGEGLM</code> objects can be subsetted, see <code><a href="/link/subsetting?package=edge&version=2.4.2" rd-options="" data-mini-rdoc="edge::subsetting">subsetting</a></code>.<code>DGEGLM</code> objects also have a <code>show</code> method so that printing produces a compact summary of their contents.

DGEGLM-class: Digital Gene Expression Generalized Linear Model results - class

Description

Arguments

Methods

See Also