plotSpliceDGE

<code>DGELRT</code> object produced by <code>diffSpliceDGE</code>.

character string, ID of the gene to plot.

geneid

column name of <code>lrt$genes</code> containing gene IDs. Defaults to <code>lrt$genecolname</code>.

genecolname

integer, if <code>geneid=NULL</code> then this ranked gene will be plotted.

rank

numeric, mark exons with false discovery rate less than this cutoff.

Plot relative log-fold changes by exons for the specified gene and highlight the significantly spliced exons.

The edge package implements methods for carrying out differential
    expression analyses of genome-wide gene expression studies. Significance testing
    using the optimal discovery procedure and generalized likelihood ratio tests
    (equivalent to F-tests and t-tests) are implemented for general study designs.
    Special functions are available to facilitate the analysis of common study
    designs, including time course experiments. Other packages such as snm, sva,
    and qvalue are integrated in edge to provide a wide range of tools for gene
    expression analysis.

plotSpliceDGE: Differential splicing plot

Description

Usage

Arguments

Value

Details

See Also